About
iDR stands for Ivan's Dendrogram Renderer and is a small command line utility which renders output files from hierarchical clustering performed by Eisen Cluster. It is not suited for exploratory purposes (like for example jTreeView), but rather for the final high-quality render for publication.
Features:
- iDR renders column dendrogram, heatmap as well as column and row names in addition to a brief legend for each additional variable
- iDR is easy to use: place files in correct folders and run the utility
- iDR adds any number of additional user-defined color-coded variables
- iDR's outputs an editable and freely scalable PostScript file
Limitations:
- iDR is currently unable to render row dendrogram
- iDR does not have a GUI
Example
Downloads
Current version: 4.4
Linux version: iDR-4.4.tar.gz
Windows version: iDR-4.4.zip
Version History
- v.4.4 - error checking for grp-loading; added warning on grp-load if name count mismatch
- v.4.3 - new coloring methods implemented
- v.4.2 - bugfixes (stream check etc), align heatmap, output gene names
- v.4.1 - if a sample name is present in a .grp file, but not in the cluster: ignore
- v.4.0 - heatmap rendering implemented
- v.3.5 - enhancement of PS-output for Illustrator; workaround for clear()-fstream bug on win32
- v.3.4 - some code cleanup, proper crash handling
- v.3.3 - made windows-safe
- v.3.2 - automatic file load
- v.3.1 - clean up code
- v.3.0 - export to PostScript
- v.2.0 - SDL raster rendering
Contact
If you have any questions or suggestions, feel free to contact me.
Links
Eisen Cluster
|
